, including all inherited members.
| addComment(const char *comment) | SamFileHeader | |
| addHD(SamHeaderHD *hd) | SamFileHeader | |
| addHeader(const char *header) | SamFileHeader | |
| addHeaderLine(const char *type, const char *tag, const char *value) | SamFileHeader | |
| addHeaderLine(const char *headerLine) | SamFileHeader | |
| addPG(SamHeaderPG *pg) | SamFileHeader | |
| addRecordCopy(const SamHeaderRecord &hdrRec) | SamFileHeader | |
| addRG(SamHeaderRG *rg) | SamFileHeader | |
| addSQ(SamHeaderSQ *sq) | SamFileHeader | |
| appendCommentLines(std::string &commentLines) | SamFileHeader | |
| copy(const SamFileHeader &header) | SamFileHeader | |
| EMPTY_RETURN (defined in SamFileHeader) | SamFileHeader | [static] |
| getErrorMessage() | SamFileHeader | [inline] |
| getHD() | SamFileHeader | |
| getHDTagValue(const char *tag) | SamFileHeader | |
| getHeaderString(std::string &header) const | SamFileHeader | |
| getNextComment() | SamFileHeader | |
| getNextHeaderLine(std::string &headerLine) | SamFileHeader | |
| getNextHeaderRecord(uint32_t &index, SamHeaderRecord::SamHeaderRecordType headerType) | SamFileHeader | |
| getNextHeaderRecord() | SamFileHeader | |
| getNextPGRecord() | SamFileHeader | |
| getNextRGRecord() | SamFileHeader | |
| getNextSQRecord() | SamFileHeader | |
| getNumPGs() | SamFileHeader | |
| getNumRGs() | SamFileHeader | |
| getNumSQs() | SamFileHeader | |
| getPG(const char *id) | SamFileHeader | |
| getPGTagValue(const char *tag, const char *id) | SamFileHeader | |
| getReferenceID(const String &referenceName, bool addID=false) | SamFileHeader | |
| getReferenceID(const char *referenceName, bool addID=false) | SamFileHeader | |
| getReferenceInfo() const | SamFileHeader | |
| getReferenceInfoForBamInterface() (defined in SamFileHeader) | SamFileHeader | |
| getReferenceLabel(int id) const | SamFileHeader | |
| getRG(const char *id) | SamFileHeader | |
| getRGTagValue(const char *tag, const char *id) | SamFileHeader | |
| getSortOrder() | SamFileHeader | |
| getSQ(const char *name) | SamFileHeader | |
| getSQTagValue(const char *tag, const char *name) | SamFileHeader | |
| getTagSO() | SamFileHeader | |
| operator=(const SamFileHeader &header) | SamFileHeader | |
| removeHD() | SamFileHeader | |
| removePG(const char *id) | SamFileHeader | |
| removeRG(const char *id) | SamFileHeader | |
| removeSQ(const char *name) | SamFileHeader | |
| resetCommentIter() | SamFileHeader | |
| resetHeader() | SamFileHeader | |
| resetHeaderRecordIter() | SamFileHeader | |
| resetPGRecordIter() | SamFileHeader | |
| resetRGRecordIter() | SamFileHeader | |
| resetSQRecordIter() | SamFileHeader | |
| SamFileHeader() (defined in SamFileHeader) | SamFileHeader | |
| SamFileHeader(const SamFileHeader &header) | SamFileHeader | |
| setHDTag(const char *tag, const char *value) | SamFileHeader | |
| setPGTag(const char *tag, const char *value, const char *id) | SamFileHeader | |
| setRGTag(const char *tag, const char *value, const char *id) | SamFileHeader | |
| setSQTag(const char *tag, const char *value, const char *name) | SamFileHeader | |
| ~SamFileHeader() (defined in SamFileHeader) | SamFileHeader | |
1.7.6.1 
