, including all inherited members.
DUPLICATE (defined in SamFlag) | SamFlag | [static] |
FAILED_QUALITY (defined in SamFlag) | SamFlag | [static] |
FIRST_READ (defined in SamFlag) | SamFlag | [static] |
FRAGMENT_INFO (defined in SamFlag) | SamFlag | [static] |
FRAGMENT_SHIFT (defined in SamFlag) | SamFlag | [static] |
getFragmentType(uint16_t flag) (defined in SamFlag) | SamFlag | [inline, static] |
isDuplicate(uint16_t flag) (defined in SamFlag) | SamFlag | [inline, static] |
isFirstFragment(uint16_t flag) | SamFlag | [inline, static] |
isLastFragment(uint16_t flag) | SamFlag | [inline, static] |
isMapped(uint16_t flag) (defined in SamFlag) | SamFlag | [inline, static] |
isMateMapped(uint16_t flag) (defined in SamFlag) | SamFlag | [inline, static] |
isMateReverse(uint16_t flag) (defined in SamFlag) | SamFlag | [inline, static] |
isMidFragment(uint16_t flag) | SamFlag | [inline, static] |
isPaired(uint16_t flag) (defined in SamFlag) | SamFlag | [inline, static] |
isProperPair(uint16_t flag) (defined in SamFlag) | SamFlag | [inline, static] |
isQCFailure(uint16_t flag) (defined in SamFlag) | SamFlag | [inline, static] |
isReverse(uint16_t flag) (defined in SamFlag) | SamFlag | [inline, static] |
isSecondary(uint16_t flag) (defined in SamFlag) | SamFlag | [inline, static] |
isUnknownFragment(uint16_t flag) | SamFlag | [inline, static] |
MATE_REVERSED (defined in SamFlag) | SamFlag | [static] |
MATE_UNMAPPED (defined in SamFlag) | SamFlag | [static] |
PAIRED (defined in SamFlag) | SamFlag | [static] |
PROPER_PAIR (defined in SamFlag) | SamFlag | [static] |
REVERSE (defined in SamFlag) | SamFlag | [static] |
SECOND_READ (defined in SamFlag) | SamFlag | [static] |
SECONDARY_ALIGNMENT (defined in SamFlag) | SamFlag | [static] |
setDuplicate(uint16_t &flag) | SamFlag | [inline, static] |
setNotDuplicate(uint16_t &flag) | SamFlag | [inline, static] |
setUnmapped(uint16_t &flag) | SamFlag | [inline, static] |
SUPPLEMENTARY_ALIGNMENT (defined in SamFlag) | SamFlag | [static] |
UNMAPPED (defined in SamFlag) | SamFlag | [static] |