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SamFlag Member List
This is the complete list of members for SamFlag, including all inherited members.
DUPLICATE (defined in SamFlag)SamFlag [static]
FAILED_QUALITY (defined in SamFlag)SamFlag [static]
FIRST_READ (defined in SamFlag)SamFlag [static]
FRAGMENT_INFO (defined in SamFlag)SamFlag [static]
FRAGMENT_SHIFT (defined in SamFlag)SamFlag [static]
getFragmentType(uint16_t flag) (defined in SamFlag)SamFlag [inline, static]
isDuplicate(uint16_t flag) (defined in SamFlag)SamFlag [inline, static]
isFirstFragment(uint16_t flag)SamFlag [inline, static]
isLastFragment(uint16_t flag)SamFlag [inline, static]
isMapped(uint16_t flag) (defined in SamFlag)SamFlag [inline, static]
isMateMapped(uint16_t flag) (defined in SamFlag)SamFlag [inline, static]
isMateReverse(uint16_t flag) (defined in SamFlag)SamFlag [inline, static]
isMidFragment(uint16_t flag)SamFlag [inline, static]
isPaired(uint16_t flag) (defined in SamFlag)SamFlag [inline, static]
isProperPair(uint16_t flag) (defined in SamFlag)SamFlag [inline, static]
isQCFailure(uint16_t flag) (defined in SamFlag)SamFlag [inline, static]
isReverse(uint16_t flag) (defined in SamFlag)SamFlag [inline, static]
isSecondary(uint16_t flag) (defined in SamFlag)SamFlag [inline, static]
isUnknownFragment(uint16_t flag)SamFlag [inline, static]
MATE_REVERSED (defined in SamFlag)SamFlag [static]
MATE_UNMAPPED (defined in SamFlag)SamFlag [static]
PAIRED (defined in SamFlag)SamFlag [static]
PROPER_PAIR (defined in SamFlag)SamFlag [static]
REVERSE (defined in SamFlag)SamFlag [static]
SECOND_READ (defined in SamFlag)SamFlag [static]
SECONDARY_ALIGNMENT (defined in SamFlag)SamFlag [static]
setDuplicate(uint16_t &flag)SamFlag [inline, static]
setNotDuplicate(uint16_t &flag)SamFlag [inline, static]
setUnmapped(uint16_t &flag)SamFlag [inline, static]
SUPPLEMENTARY_ALIGNMENT (defined in SamFlag)SamFlag [static]
UNMAPPED (defined in SamFlag)SamFlag [static]
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