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Tabix Member List
This is the complete list of members for Tabix, including all inherited members.
Format enum name (defined in Tabix)Tabix
FORMAT_GENERIC enum value (defined in Tabix)Tabix
FORMAT_SAM enum value (defined in Tabix)Tabix
FORMAT_VCF enum value (defined in Tabix)Tabix
getBinsForRegion(uint32_t start, uint32_t end, uint16_t binList[MAX_NUM_BINS]) (defined in IndexBase)IndexBase [protected, static]
getFormat() const (defined in Tabix)Tabix [inline]
getMinOffsetFromLinearIndex(int32_t refID, uint32_t position, uint64_t &minOffset) const (defined in IndexBase)IndexBase
getNumRefs() const IndexBase
getRefName(unsigned int indexNum) const Tabix
getStartPos(const char *refName, int32_t start, uint64_t &fileStartPos) const Tabix
IndexBase() (defined in IndexBase)IndexBase
LINEAR_INDEX_SHIFT (defined in IndexBase)IndexBase [protected, static]
MAX_NUM_BINS (defined in IndexBase)IndexBase [protected, static]
MAX_POSITION (defined in IndexBase)IndexBase [protected, static]
myRefs (defined in IndexBase)IndexBase [protected]
n_ref (defined in IndexBase)IndexBase [protected]
readIndex(const char *filename)Tabix [virtual]
resetIndex()Tabix [virtual]
Tabix() (defined in Tabix)Tabix
~IndexBase() (defined in IndexBase)IndexBase [virtual]
~Tabix() (defined in Tabix)Tabix [virtual]
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