2010
American Society of Human Genetics 60th Annual Meeting, Washington, DC, November 2010.
34. Li Y, Waterworth DM, Li L, Zhou Y, Vollenweider P, Waeber G, Mooser VE, Abecasis GR, Ehm MG.
Leveraging publicly available sequencing data in the post-GWAS era to identify novel significant association signals. (Talk)
33. Li M, Li Y, Cheung VG. Global patterns of RNA editing in humans. (Talk in Plenary Session)
32. Byrnes A, Li M, Li Y. Haplotype and dosage-based tests for rare variant association. (Poster)
31. Chen W, Li B, Li Y, Abecasis G. An efficient LD-based variant calling and phasing method for next generation sequencing in trios. (Talk)
30. Zhan X, Anderson P, Li Y, Abecasis G. KARMA: K-tuple alignment with rapid matching algorithm. (Poster)
29. Sidore C, Abecasis G, Kang HM, Li Y, Sanna S, Zollner S, Lo Y.
Software for generating linkage-disequilibrium aware genotype calls from next generation sequence data. (Poster)
28. Wu Y, Li Y, Ethan EM, Croteau-Chonka DC, Kuzawa CW, McDade TW, Qin L, Curochicin G, Borja JB, Lange LA, Adair LS, Mohlke KL.
Genome-wide association study for adiponectin levels in Filipino women identifies CDH13 and a novel uncommon haplotype at KNG1-ADIPOQ. (Poster)
27. Croteau-Chonka DC, Wu Y, Li Y, Lange LA, Kuzawa CW, McDade TW, Laakso M, Borja JB, Adair LS, Lange EM, Mohlke KL.
An uncommon SNP strongly associated with adiponectin levels in Filipinos is indirectly associated with a GWA signal 800 kb away at the ADIPOQ gene. (Poster)
26. Fogarty MP, Bucholovich ML, Gaulton KJ, Li Y, Mohlke KL.
Evaluation of three molecular mechanisms for altered MMAB transcript level at a locus associated with high density lipoprotein cholesterol. (Poster)
25. Roman TS, Marvelle AF, Gaulton KJ, Fogarty MP, Gonzalez AJ, Li Y, Mohlke KL.
Allele-specific regulatory activity of variants associated with human high-density lipoprotein cholesterol level at the GALNT2 locus. (Poster)
24. Lo YY, Sidore C, Li Y, Li B, Li J, Verzilli C, Nangle K, Chissoe SL, Nelson MR, Ehm MG, Abecasis G, Zollner S.
Imputation-based genotype calling in a worldwide sample of 15, 000 individuals. (Talk)
23. Ehm MG, Li L, Song K, Bacanu SA, Cox C, Aponte J, Mitchell JK, Chissoe SL, Fraser D, Briley D, Yuan X,
Verzilli C, Shen J, Nangle K, Vollenweider P, Waeber G, Cardon LR, Mooser VE, Waterworth DM, Whittaker JC, Nelson MR, Li Y.
Strengths and limitations of follow-up imputation to investigate variants originally identified through deep-sequencing experiments. (Talk)
22. Nelson MR, Ehm MG, Warren L, Verzilli C, Shen J, Fraser D, Aponte J, Novembre J, Wegmann D, Li J, Zollner S,
Li Y, St Jean P, Li L, Woollard P, Topp S, Hall M, Nangle K, Abecasis G, Cardon LR, Whittaker JC, Chissoe SL, Mooser V.
Deep resequencing study of 202 genes in 15, 000 individuals across 12 diseases to support drug repositioning. (Talk)
21. Novembre J, Wegmann D, Gopalakrishnan S, Zawistowski M, St Jean P, Li L, Ehm MG, Li J, Li Y,
Abecasis G, Whittaker JC, Chissoe SL, Mooser VE, Nelson MR, Zollner S.
The geographic structure of rare variant diversity. (Poster)
20. Kapur K, Johnson T, Beckmann N, Sehmi J, Tanaka T, Kutalik Z, Styrkarsdottir U, Zhang W, Marek D, Gudbjartsson D, Milaneschi Y, Holm H, DiIorio A, Waterworth D,
Li Y, Singleton A, Bjornsdottir U, Sigurdsson G, Hernandez D, DeSilva R, Elliott P, Eyjolfsson G,
Guralnik J, Scott J, Thorsteinsdottir U, Bandinelli S, Chambers J, Stefansson K, Waeber G, Ferrucci L.
Genome-wide meta-analysis for serum calcium identifies significantly associated SNPs near the calcium-sensing receptor gene. (Poster)
19. Bowden DW, Bielinski SJ, Kao L, Siscovick D, Patel SR, Zmuda JR, Meigs JB, Sims M, Sarpong D, Rich SS, Freedman BI,
Goodarzi MO, Grant SFA, Langefeld CD, Allred ND, Pankow JS, Li Y,
Lange LA, Wilson JG, Ng MC, and the Candidate Gene Association Resource.
Meta analysis of African American genomewide association studies of type 2 diabetes: The CARe T2D Plus Study. (Poster)
18. Ellinghaus E, Ellinghaus D, Stuart PE, Nair RP, Debrus S, Raelson JV, Belouchi M, Fournier H, Reinhard C, Ding J, Li Y,
Tejasvi T, Gudjonsson J, Stoll SW, Lambert S, Weidinger S, Eberlein B, Kunz M, Rahman P, Gladman D,
Gieger C, Wichmann HE, Karlsen TH, Kabelitz D, Mrowietz U, Abecasis GR, Elder JT, Schreiber S, Weichenthal M, Franke A.
Genome-wide association study for psoriasis. (Talk)
17. Sanna S, Pitzalis M, Zoledziewska M, Zara I, Sidore C, Murru R, Whalen MB, Scirru L, Secci MA,
Deidda F, Deidda L, Barizzone N, Poddie F, Morelli L, Farina G, Dei M, Lai S, Mulas A, Li Y,
Pugliatti M, Traccis S, Angius A, D'alfonso S, Melis M, Rosati G, Abecasis GR, Uda M, Marrosu MG, Schlessinger D, Cucca F.
Variants within the CBLB gene are associated with multiple sclerosis. (Poster)
16. Li Y, Handsaker RE, Abecasis GR, McCarroll SA.
Accurate CNV Genotyping from Massively Parallel Sequencing Data.
The Biology of Genomes, Cold Spring Harbor, NY, May 2010.
2009
15. Li Y, Abecasis GR.
Taking Advantage of Distant Relatedness: Genotype Imputation in the Resequencing Era.
American Society of Human Genetics 59th Annual Meeting, Honolulu, Hawaii, October 2009.
14. Li B, Li Y , Sanna S, Schlessinger D, Najjar S, Scuteri A, Lakkata E, Boehnke M, Abecasis GR and Uda M for Sardinian Project.
Fine mapping of common and rare variants associated with low-density lipoprotein cholesterol (LDL-C) via sequencing candidate loci following genome-wide scans.
American Society of Human Genetics 59th Annual Meeting, Honolulu, Hawaii, October 2009.
13. Lange LA, Marvelle AF, Croteau-Chonka D, Kuzawa C, McDade TW, Li Y ,
Levy S, Daniels M, Borja J, Lange EM, Adair LS and Mohlke K.
Genome-wide association study of homocysteine levels in Filipinos identifies a new locus (CPS1)
and evidence for a stronger MTHFR effect in young adults than in their mothers.
American Society of Human Genetics 59th Annual Meeting, Honolulu, Hawaii, October 2009.
2008
12. Li Y, Abecasis GR.
Efficient Reconstruction of Whole Genomes Using Massively Parallel Shotgun Sequence Data.
American Society of Human Genetics 58th Annual Meeting, Philadelphia, Pennsylvania, November 2008.
11. Li Y, Willer CJ, Ding J, Scheet P, Abecasis GR.
Rapid Genotype Imputation and Analysis of Resequencing Data Using Markov Models.
Joint Statistical Meeting in Denver.
10. Zheng J, Li Y, Abecasis GR, Scheet P.
A Comparison of Approaches to Account for Uncertainty in Analysis of Imputed Genotypes.
American Society of Human Genetics 58th Annual Meeting, Philadelphia, Pennsylvania, November 2008.
9. Huang L, Li Y, Singleton AB, Hardy JA, Abecasis GR, Rosenberg NA, Scheet P.
Genotype Imputation Accuracy Across World Human Populations.
American Society of Human Genetics 58th Annual Meeting, Philadelphia, Pennsylvania, November 2008.
8. Arnold S, Guy M, Kashuk K, Li Y, Abecasis GR, Chakravarti A.
Semaphorins as Candidate Genes in Hirschsprung Disease.
American Society of Human Genetics 58th Annual Meeting, Philadelphia, Pennsylvania, November 2008.
7. Xiang F, Scott LJ, Li Y, Jackson AU, Willer CJ, Stringham HM, Erdos MR,
Bonnycastle LL, Kubalanza K, Swift AJ, Abecasis GR, Mohlke KL, Tuomilehto J, Bergman RN, Collins FS, Watanabe RM, Boehnke M.
Genome-wide Association for Insulin Resistance and Secretion in 542 Genotyped and Imputed Individuals.
American Society of Human Genetics 58th Annual Meeting, Philadelphia, Pennsylvania, November 2008.
6. Chen W, Li Y, Abecasis GR.
State Space Reduction in Hidden Markov Model for Haplotyping, Imputation and Analysis of Shotgun Sequence Data.
American Society of Human Genetics 58th Annual Meeting, Philadelphia, Pennsylvania, November 2008.
2007
5. Li Y, Willer CJ, Ding J, Scheet P, Abecasis GR.
In silico Genotyping for Genome-wide Association Studies.
American Society of Human Genetics 57th Annual Meeting, San Diego, California, October 2007.
4. Sanna S, Jackson AU, Usala G, Willer CJ, Dei M, Bonnycastle LL, Lai S, Li Y,
Uda M, Erdos MR, Shen H, Shuldiner A, Cao A, Bergam RM, Schlessinger D, Collins FS, Boehnke M, Abecasis GR, Nagaraja R, Mohlke KL.
Genome-wide Association Scan for Height in 6,671 Individuals from Finland and Sardinia.
American Society of Human Genetics 57th Annual Meeting, San Diego, California, October 2007.
2006
3.
Li Y, Abecasis GR.
Mach 1.0: Rapid Haplotype Reconstruction and Missing Genotype Inference.
American Society of Human Genetics 56th Annual Meeting, New Orleans, Louisiana, October 2006.
2. Absher D, Li J, Thompson RC, Burmeister M, Scott LJ, Li Y,
Meng F, Guan W, Vawter MP, Choudary P, Tomita H, Evans SJ, Bunney WE,
Jones EG, Barchas JD, Schatzberg A, Akil H, Watson SJ, Boehnke M, Myers RM.
An Association Study of Ninety-three Candidate Genes in Bipolar Disorder.
American Society of Human Genetics 56th Annual Meeting, New Orleans, Louisiana, October 2006.
1. Gaulton KJ, Conneely KN, Li Y, Jackson AU, Scott LJ, Duren WL, Chines PS,
Narisu N, Bonnycastle L, Swift A, Valle TT, Tuomilehto J, Bergman RN, Collins FS, Boehnke M, Mohlke KL.
Testing for Association between Type 2 Diabetes and 225 Candidate Genes in 2357 Finnish Cases and Controls.
American Society of Human Genetics 56th Annual Meeting, New Orleans, Louisiana, October 2006.
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