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32. Wu Y, McDade TW, Kuzawa CW, Borja J, Li Y, Adair LS, Mohlke KL, Lange LA. Genome-wide Association with C-Reactive Protein Levels in CLHNS: Evidence for the CRP and HNF1A Loci and their Interaction with Exposure to a Pathogenic Environment. Inflammation [Epub ahead of print] [abstract] [PDF]
31. Li M, Wang IX, Li Y, Bruzel A, Richards AL, Toung JM, Cheung VG. Widespread RNA and DNA Sequence Differences in the Human Transcriptome. Science 333(6038):53-58. [abstract] [PDF]
30. Li Y, Sidore C, Kang HM, Boehnke M, Abecasis GR. Low-coverage sequencing: Implications for design of complex trait association studies. Genome Research 21(6):940-951. [abstract] [PDF]
29. Zheng J, Li Y, Abecasis GR, Scheet P. A comparison of approaches to account for uncertainty in analysis of imputed genotypes. Genetic Epidemiology 35(2): 102-110. [abstract] [PDF]


28. Ding J, Gudjonsson JE, Liang L, Stuart PE, Li Y, Chen W, Weichenthal M, Ellinghaus E, Franke A, Cookson W, Nair RP, Elder JT, Abecasis GR. Gene expression in skin and lymphoblastoid cells: refined statistical method reveals extensive overlap in cis-eQTL signals. American Journal of Human Genetics 87: 779-789. [abstract] [PDF]
27. Zawistowski M, Gopalakrishnan S, Ding J, Li Y, Grimm S, Zollner S. Extending rare-variant testing strategies: analysis of noncoding sequence and imputed genotypes. American Journal of Human Genetics 87: 604-617. [abstract] [PDF]
26. Li Y, Willer CJ, Ding J, Scheet P, Abecasis GR. MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. Genetic Epidemiology 34(8): 816-834. [abstract] [PDF]
25. Li Y, Byrnes AE, Li M. To identify associations with rare variants, just WHaIT: Weighted Haplotype and Imputation-based Tests. American Journal of Human Genetics 87: 728-735. [abstract] [PDF] [errata]
24. The 1000 Genomes Project Consortium. A map of human genome variation from population-scale sequencing. Nature 467: 1061-1073. [abstract] [PDF]
23. Wassel CL, Lange LA, ..., Li Y, ..., Reiner AP. Association of genomic loci from a cardiovascular gene SNP array with fibrinogen levels in European Americans and African-Americans from six cohort studies: the Candidate gene Association Resource (CARe). Blood 117(1):268-275. [abstract] [PDF]
22. Stuart PE, Nair RP, Ellinghaus E, Ding J, Tejasvi T, Gudjonsson JE, Li Y, ..., Elder JT. Genome-wide association analysis identifies three psoriasis susceptibility loci. Nature Genetics 42(11): 1000-4. [abstract] [PDF]
21. Ellinghaus E, Ellinghaus D, ..., Li Y, ..., Franke A. Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2. Nature Genetics 42(11): 991-995. [abstract] [PDF]
20. Wu Y, Li Y, ..., Mohlke KL. Genome-wide association study for adiponectin levels in Filipino women identifies CDH13 and a novel uncommon haplotype at KNG1-ADIPOQ. Human Molecular Genetics 19(24): 4955-4964. [abstract] [PDF]
19. Kapur K, Johnson T, ..., Li Y, ..., Bergmann S. Genome-wide meta-analysis for serum calcium identifies significantly associated SNPs near the calcium-sensing receptor (CASR) gene. PLoS Genetics 6: e1001035. [abstract] [PDF]
18. Willer CJ, Li Y, Abecasis GR. METAL: Fast and efficient meta-analysis of genomewide association scans. Bioinformatics 26: 2190-2191. [abstract] [PDF]
17. Sanna S, Pitzalis M, ..., Li Y, ..., Schlessinger D, Cucca F. Variants within the immunoregulatory CBLB gene are associated with multiple sclerosis. Nature Genetics 42(6): 495-497. [abstract] [PDF]
16. Chambers JC, Zhang W, ..., Li Y, ..., Kooner JS. Genetic loci influencing kidney function and chronic kidney disease. Nature Genetics 42(5): 373-375. [abstract] [PDF]
15. Lange LA, Croteau-Chonka DC, ..., Li Y, ..., Mohlke KL. Genome-wide association study of homocysteine levels in Filipinos provides evidence for CPS1 in women and a stronger MTHFR effect in young adults. Human Molecular Genetics 19: 2050-2058. [abstract] [PDF]
14. Dupuis J, Langenberg C, ..., Li Y, ..., Barroso I. New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk. Nature Genetics 42(2): 105-116. [abstract] [PDF]


13. Chambers JC, Zhang W, Li Y, ..., Kooner JS. Genome-wide association study identifies variants in TMPRSS6 associated with hemoglobin levels. Nature Genetics 41(11): 1170-1172. [abstract] [PDF]
12. Li Y, Willer CJ, Sanna S, Abecasis GR. Genotype imputation. Annual Review Genomics and Human Genetics 10: 387-406. [abstract] [PDF]
11. Huang L, Li Y, Singleton AB, Hardy JA, Abecasis GR, Rosenberg NA, Scheet P. Genotype imputation accuracy across worldwide human populations. American Journal of Human Genetics 84(2): 235-50. [abstract] [PDF]
10. Nair RP, Duffin KC, ..., Li Y, ..., Abecasis GR. Genome-wide scan reveals association of psoriasis with IL-23 and NF-kB pathways. Nature Genetics 41(2): 199-204. [abstract] [PDF]
9. Kathiresan S, Willer CJ, ..., Li Y, ..., Cupples LA. Common variants at 30 loci contribute to polygenic dyslipidemia. Nature Genetics 41(1): 56-65. [abstract] [PDF]


8. Yuan X, Waterworth D, ..., Li Y, ..., Kooner JS, Mooser V. Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes. American Journal of Human Genetics 83:520-8. [abstract] [PDF]
7. Gaulton KJ, Willer CJ, Li Y, ..., Mohlke KL. Comprehensive association study of type 2 diabetes and related quantitative traits with 222 candidate genes. Diabetes 57: 3136-44. [abstract] [PDF]
6. Chambers JC, Elliott P, Zabaneh D, Zhang W, Li Y, Froguel P, Balding D, Scott J, Kooner JS. Common genetic variation near the melanocortin-4 receptor gene is associated with waist circumference and insulin resistance. Nature Genetics 40(6):716-8. [abstract] [PDF]
5. Zeggini E, Scott LJ, ..., Li Y, ..., Altshuler D. Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes. Nature Genetics 40(5):638-45. [abstract] [PDF]
4. Willer CJ, Sanna S, ..., Li Y, ..., Abecasis GR. Newly identified loci that influence lipid concentrations and risk of coronary artery disease. Nature Genetics 40(2):161-9. [abstract] [PDF]


3. The International HapMap Consortium. A second generation human haplotype map of over 3.1 million SNPs. Nature 449:851-61. [abstract] [PDF]
2. Scott JL, Mohlke KL, Bonnycastle LL, Willer CJ, Li Y, ..., Boehnke M. A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants. Science 316:1341-5. [abstract] [PDF]


1. Li M, Atmaca-Sonmez P, ..., Li Y, ..., Abecasis GR. CFH haplotypes without the Y402H coding variant show strong association with susceptibility to age-related macular degeneration. Nature Genetics 38:1049-54. [abstract] [PDF]



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