|
Command-Line Tools - Non-Family Data |
|
ldmax |
Uses the Slatkin and Excoffier (1995) algorithm to analyse genotype
data. |
|
setup-eh |
Prepares EH input files, given a map file and linkage format
pedigree file as input. (not supported in newer versions of
GOLD) |
|
process-eh |
Runs EH to analyse all marker pairs, and collects results into
a table. (not supported in newer versions of GOLD) |
|
Command-Line Tools - Family Data |
|
setup-simwalk2 |
Prepares simwalk2 input files, given a map file and linkage format
pedigree file as input. |
|
collect-simwalk2 |
Collects founder haplotypes inferred by Simwalk2 into a single
file. |
|
haploxt |
Calculates disequilibrium statistics from haplotype data. |
|
Graphical Interface |
|
GOLD |
The graphical interface is currently compatible with Microsoft
Windows. |
|
Additional Information |
|
|
File formats, definitions of
available statistics and links to EH and Simwalk2 sites. |
