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GOLD - Online Documentation

Command-Line Tools - Non-Family Data

ldmax

Uses the Slatkin and Excoffier (1995) algorithm to analyse genotype data.

 setup-eh

Prepares EH input files, given a map file and linkage format pedigree file as input. (not supported in newer versions of GOLD)

process-eh

Runs EH to analyse all marker pairs, and collects results into a table. (not supported in newer versions of GOLD)
Command-Line Tools - Family Data

 setup-simwalk2

Prepares simwalk2 input files, given a map file and linkage format pedigree file as input.

 collect-simwalk2

Collects founder haplotypes inferred by Simwalk2 into a single file.

haploxt

Calculates disequilibrium statistics from haplotype data.
Graphical Interface

GOLD

The graphical interface is currently compatible with Microsoft Windows.
Additional Information
   File formats, definitions of available statistics and links to EH and Simwalk2 sites.


 
 

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