PileupElement Class Reference

This is a base class pileup component, representing the information for one reference position. More...

Inheritance diagram for PileupElement:

Collaboration diagram for PileupElement:

Public Member Functions
	PileupElement (const PileupElement &q)
virtual void	addEntry (SamRecord &record)
virtual void	analyze ()
virtual void	reset (int32_t refPosition)
const char *	getChromosome () const
int32_t	getRefPosition () const
Static Public Member Functions
static void	setReference (GenomeSequence *reference)
Static Public Attributes
static const int32_t	UNSET_POSITION = -1
Static Protected Member Functions
static GenomeSequence *	getReference ()

Detailed Description

This is a base class pileup component, representing the information for one reference position.

Child classes will be defined to detail more information that needs to be saved and how it should be analyzed.

Definition at line 26 of file PileupElement.h.

The documentation for this class was generated from the following files: