libStatGen Software  1
glfEntry Struct Reference
Collaboration diagram for glfEntry:

List of all members.

Public Member Functions

glfEntryoperator= (glfEntry &rhs)

Public Attributes

unsigned char refBase:4
 "XACMGRSVTWYHKDBN"[ref_base] gives the reference base
unsigned char recordType:4
unsigned int offset
 offset of this record from the previous one, in bases
unsigned depth:24
 log10 minimum likelihood * 10 and the number of mapped reads
unsigned minLLK:8
unsigned char mapQuality
 root mean squared maximum mapping quality for overlapping reads
union {
   unsigned char   lk [10]
 log10 likelihood ratio * 10 for genotypes AA, AC, AG, AT, CC, CG, CT, GG, GT, TT
   glfIndel   indel
}; 

Detailed Description

Definition at line 42 of file glfHandler.h.


The documentation for this struct was generated from the following files:
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