libStatGen Software  1
glfEntry Struct Reference
Collaboration diagram for glfEntry:

List of all members.

Public Member Functions

glfEntryoperator= (glfEntry &rhs)

Public Attributes

unsigned char refBase:4
 "XACMGRSVTWYHKDBN"[ref_base] gives the reference base
unsigned char recordType:4
unsigned int offset
 offset of this record from the previous one, in bases
unsigned depth:24
 log10 minimum likelihood * 10 and the number of mapped reads
unsigned minLLK:8
unsigned char mapQuality
 root mean squared maximum mapping quality for overlapping reads
union {
   unsigned char   lk [10]
 log10 likelihood ratio * 10 for genotypes AA, AC, AG, AT, CC, CG, CT, GG, GT, TT
   glfIndel   indel

Detailed Description

Definition at line 42 of file glfHandler.h.

The documentation for this struct was generated from the following files:
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