SamSingleBaseMatchInfo Class Reference

This class contains the match/mismatch information between the reference and a read for a single base. More...

#include <SamQuerySeqWithRefHelper.h>

List of all members.

Public Types
enum	Type { UNKNOWN, MATCH, MISMATCH }
	More types can be added later as needed.
Public Member Functions
Type	getType ()
	Get the type (match/mismatch/unknown) for this object.
int32_t	getQueryIndex ()
	Get the query index for this object.
void	setType (Type newType)
	Set the type (match/mismatch/unkown) for this object.
void	setQueryIndex (int32_t queryIndex)
	Set the query index for this object.

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Detailed Description

This class contains the match/mismatch information between the reference and a read for a single base.

Definition at line 28 of file SamQuerySeqWithRefHelper.h.

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The documentation for this class was generated from the following files:

• bam/SamQuerySeqWithRefHelper.h
• bam/SamQuerySeqWithRefHelper.cpp