Inheritance diagram for Pedigree:

Collaboration diagram for Pedigree:

Public Member Functions
void	Prepare (IFILE &input)
void	Load (IFILE &input)
void	LoadMendel (IFILE &input)
void	Prepare (const char *input)
void	Load (const char *input, bool allowFailures=false)
int	TranslateSexCode (const char *code, bool &failure)
void	PrepareDichotomization ()
int	Dichotomize (int trait, double mean=_NAN_)
void	DichotomizeAll (double mean=_NAN_)
void	WriteDataFile (FILE *output)
void	WritePedigreeFile (FILE *output)
void	WriteDataFile (const char *output)
void	WritePedigreeFile (const char *output)
void	WritePerson (FILE output, int who, const char famid=NULL, const char pid=NULL, const char fatid=NULL, const char *motid=NULL)
void	WriteRecodedPerson (FILE output, int who, MarkerInfo markerInfo, const char famid=NULL, const char pid=NULL, const char fatid=NULL, const char *motid=NULL)
void	Sort ()
Family *	FindFamily (const char *famid)
Person *	FindPerson (const char famid, const char pid)
int	CountAlleles (int marker)
void	LumpAlleles (double treshold, bool reorder=true)
void	EstimateFrequencies (int estimator, bool quiet=false)
Person &	operator[] (int i)
bool	InheritanceCheck (bool abortIfInconsistent=true)
bool	AutosomalCheck ()
bool	SexLinkedCheck ()
bool	TwinCheck ()
void	MergeTwins ()
void	Trim (bool quiet=false, int *informative=NULL)
void	AddPerson (const char famid, const char pid, const char fatid, const char motid, int sex, bool delay_sort=false)
void	ExtractFamily (int id, Pedigree &new_ped)
void	ExtractOnAffection (int a, Pedigree &new_ped, int target_status=2)
void	Filter (IntArray &filter)
void	ShowMemoryInfo ()
Public Attributes
int	size
int	count
Person **	persons
int	familyCount
Family **	families
int	haveTwins
PedigreeDescription	pd
PedigreeDescription *	multiPd
int	multiFileCount
Static Public Attributes
static bool	sexAsCovariate = false
static String	missing

Detailed Description

Definition at line 32 of file Pedigree.h.

The documentation for this class was generated from the following files:

general/Pedigree.h
general/Pedigree.cpp
general/PedigreeLoader.cpp
general/PedigreeTrim.cpp
general/PedigreeTwin.cpp

Public Member Functions

Public Attributes

Static Public Attributes

Detailed Description