PedigreeGlobals Class Reference

Inheritance diagram for PedigreeGlobals:

Collaboration diagram for PedigreeGlobals:

List of all members.

Static Public Member Functions
static int	GetTraitID (const char *name)
static int	GetMarkerID (const char *name)
static int	GetCovariateID (const char *name)
static int	GetAffectionID (const char *name)
static int	GetStringID (const char *name)
static int	LookupTrait (const char *name)
static int	LookupMarker (const char *name)
static int	LookupCovariate (const char *name)
static int	LookupAffection (const char *name)
static int	LookupString (const char *name)
static void	GrowMarkerInfo ()
static MarkerInfo *	GetMarkerInfo (String &name)
static MarkerInfo *	GetMarkerInfo (int marker)
static int	SortMarkersInMapOrder (IntArray &markers, int chromosome=-1)
static void	GetOrderedMarkers (IntArray &markers)
static void	FlagMissingMarkers (IntArray &missingMarkers)
static bool	MarkerPositionsAvailable ()
static bool	AlleleFrequenciesAvailable ()
static void	VerifySexSpecificOrder ()
static void	LoadAlleleFrequencies (const char *filename, bool required=false)
static void	LoadAlleleFrequencies (IFILE &file)
static void	LoadMarkerMap (const char *filename, bool filter=false)
static void	LoadMarkerMap (IFILE &file, bool filter=false)
static void	LoadBasepairMap (const char *filename)
static void	LoadBasepairMap (IFILE &file)
static void	WriteMapFile (const char *filename)
static void	WriteMapFile (FILE *file)
static void	WriteFreqFile (const char *filename, bool old_format=false)
static void	WriteFreqFile (FILE *file, bool old_format=false)
static int	LoadAllele (int marker, String &label)
static int	LoadAllele (MarkerInfo *info, String &label)
Static Public Attributes
static int	traitCount = 0
static int	markerCount = 0
static int	affectionCount = 0
static int	covariateCount = 0
static int	stringCount = 0
static bool	chromosomeX = false
static bool	sexSpecificMap = false
static StringArray	traitNames
static StringArray	covariateNames
static StringArray	affectionNames
static StringArray	markerNames
static StringArray	stringNames
static StringIntHash	markerLookup
static StringIntHash	traitLookup
static StringIntHash	affectionLookup
static StringIntHash	covariateLookup
static StringIntHash	stringLookup
static int	markerInfoCount = 0
static int	markerInfoSize = 0
static MarkerInfo **	markerInfo = NULL
static StringHash	markerInfoByName
static MarkerInfo **	markerInfoByInteger = NULL

---

Detailed Description

Definition at line 107 of file PedigreeGlobals.h.

---

The documentation for this class was generated from the following files:

• general/PedigreeGlobals.h
• general/PedigreeGlobals.cpp