Here is a list of all documented class members with links to the class documentation for each member:

- c -

• checkFloat() : SamRecord
• checkInteger() : SamRecord
• checkRead() : GenomeSequence
• checkSequence() : SamRecordHelper
• checkString() : SamRecord
• checkTag() : SamRecord
• Cigar() : Cigar
• CigarOperator() : Cigar::CigarOperator
• CigarRoller() : CigarRoller
• clear() : SamReferenceInfo , SamValidationErrors , BaseComposition , CigarRoller , ReusableVector< DATA_TYPE >
• clearTags() : SamRecord
• clipOnMismatchThreshold() : SamFilter
• CLIPPED : SamFilter
• close() : GlfFile
• Close() : SamFile
• closeFile() : FastQFile
• color2int : BaseAsciiMap
• COLOR_SPACE : BaseAsciiMap
• combineChromPos() : SamHelper
• COORDINATE : SamFile
• copy() : GlfHeader , SamFileHeader , GlfRefSection
• create() : MemoryMap , MemoryMapArray< elementT, indexT, cookieVal, versionVal, accessorFunc, setterFunc, elementCount2BytesFunc, arrayHeaderClass > , MemoryMap
• createCopy() : SamHeaderRecord , SamHeaderHD , SamHeaderRG , SamHeaderSQ , SamHeaderPG
• createMDTag() : SamTags