- c -

• checkFloat() : SamRecord
• checkInteger() : SamRecord
• checkRead() : GenomeSequence
• checkSequence() : SamRecordHelper
• checkString() : SamRecord
• checkTag() : SamRecord
• Cigar() : Cigar
• CigarOperator() : Cigar::CigarOperator
• CigarRoller() : CigarRoller
• clear() : SamReferenceInfo , SamValidationErrors , BaseComposition , CigarRoller , ReusableVector< DATA_TYPE >
• clearTags() : SamRecord
• clipOnMismatchThreshold() : SamFilter
• close() : GlfFile
• Close() : SamFile
• closeFile() : FastQFile
• combineChromPos() : SamHelper
• copy() : SamFileHeader , GlfRefSection , GlfHeader
• create() : MemoryMapArray< elementT, indexT, cookieVal, versionVal, accessorFunc, setterFunc, elementCount2BytesFunc, arrayHeaderClass > , MemoryMap , MemoryMapArray< elementT, indexT, cookieVal, versionVal, accessorFunc, setterFunc, elementCount2BytesFunc, arrayHeaderClass > , MemoryMap
• createCopy() : SamHeaderHD , SamHeaderRecord , SamHeaderPG , SamHeaderRG , SamHeaderSQ
• createMDTag() : SamTags